My research focuses on predicting and mitigating the burden of infectious disease epidemics, through the use of mathematical/computational modelling and Bayesian inference. My primary focus is on seasonal and pandemic influenza, and (more recently) COVID-19. This includes:
I am a proponent of Reproducible Research, Open Access, and Free and Open Source Software, and produce open source software packages through my research activities (listed below).
A model that cannot be explained should not inform decisions that require justification.
This interactive SEIR demo illustrates how epidemiological parameters, such as the basic reproduction number, affect the size and duration of an epidemic.
This interactive SIR demo illustrates how outbreaks in small populations are driven by stochastic events. It is designed for use in a talk or presentation, where the model population size can be set to the number of people in the audience \(N\), each of whom should be given a unique number from \({1 \dots N}\). A simplified interface is also provided.